PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_23170V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HRT-like
Protein Properties Length: 490aa    MW: 54229.6 Da    PI: 10.3402
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_23170V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like34.53.5e-11263287226
           HRT-like   2 CGviledGsvCkrqPvkgRKRCeeH 26 
                        CGv+le+G vC++ P  gRKRC  H
  Pp3c9_23170V3.1.p 263 CGVMLENGLVCNALPQMGRKRCLVH 287
                        ***********************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVRLLHVIAG FDLVSTCRSP NFSNFSTPSQ SPNLSTPSRS SKTNSAHGDD RHTSNDEEPI  60
MSKLKYRVDG DRYSSISISR KSTTEKQLST PNRHIPVGGS VSPAHSSGRG SPRGPRLFSE  120
VFALGCSIAY RWSSTTTIEL AEFVVSELAD AFDYAWNRGR NSEVRSQDII EKIVLGKRRH  180
STSCCSINSS RWARLIFKRK LVGIKILGAY KPAEGRTRRR PGQRGAGRGP FLLLIKSPHL  240
MILGGKSVKH CEFTKIIIPV DRCGVMLENG LVCNALPQMG RKRCLVHMDV NRSRQLKSSQ  300
AQDFRSGSSG SDNHSADSYN MNSHSTPRRS APAAPSSPCF PSLTTRKSPK IPEETRKRGS  360
VSFNTWLCKS EILRVKSFEW LVAMEEIKGR GNDNCSTSPI LKPDVQSSET NSNEQIAVRV  420
SRASLNLAPV VETVPEQDPE FVLYAPEVDC GMPCRVVPQR SNTRWPPAPM LDSYATTYNP  480
PQFPRISFT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.93230.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001776245.10.0predicted protein
TrEMBLA9TCB10.0A9TCB1_PHYPA; Predicted protein
STRINGPP1S203_4V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.16e-14effector of transcription2